Table of contents

1. Where in the Genome Does Replication Begin? - Algorithmic Warmup
2. Which DNA Patterns Play the Role of Molecular Clocks? - Randomized Algorithms
3. How Do We Assemble Genomes? - Graph Algorithms
4. How Do We Sequence Antibiotics? - Brute Force Algoritms
5. How Do We Compare Biological Sequences? - Dynamic Programming
6. Are There Fragile Regions in the Human Genome? - Combinatorial Algorithms
7. Which Animal Gave Us SARS? - Evolutionary Tree Reconstruction
8. How Did Yeast Become a Wine-Maker? - Clustering Algorithms
9. How Do We Locate Disease-Causing Mutations? - Combinatorial Pattern Matching
10. Why Have Biologists Still Not Developed an HIV Vaccine? - Hidden Markov Models
11. Was T. rex Just a Big Chicken? - Computational Proteomics

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